Archive for the ‘Current Data Papers’ Category
« Older Entries |Enzymatic networks
Monday, October 17, 2011
This group analyzes enzyme networks for robustness and dynamics.
Tags: bioinformatics, Biology, Current Literature, Network Science
Posted in Current Data Papers, Network Science | No Comments »
A network analysis approach to prediabetes
Friday, October 14, 2011
The molecular, cellular, and evironemental factors of diabetes makes for a complex problem that this group attacks using a network analysis approach.
Tags: bioinformatics, Biology, disease, Network Science
Posted in Current Data Papers, Network Science | No Comments »
lincRNAs impact pluipotency and cell differentiation
Thursday, October 13, 2011
Mouse cells have been used to demonstrate that long intergenic non-coding RNAs (lincRNAs) have key roles in the circuitry controlling ES cell state.
Tags: bioinformatics, non-coding RNA, RNA
Posted in Current Data Papers, Network Science | No Comments »
An RNA language hypothesis
Wednesday, October 12, 2011
Tags: RNA
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The essential genome of a bacterium: wants versus needs.
Tuesday, October 11, 2011
Lucy Shaprio and colleagues have identifed the minimal set of genes required for caulobacter to thrive on rich media. This work will help others bioengineer the organism to function in a variety of roles involving the production of small molecule metabolites and the generation of biosensor systems.
Tags: Bacteria, Current Literature, Evolution, Genetic Control, Microbiology, Network Science
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An RNA aptamer “version” of GFP
Friday, September 16, 2011
Cool story bro: Someone wanted to track specific transcripts in vivo so they evolved an aptamer to bind a crippled fluorophore and in doing so, activate it. Yeah. Category: Things I wish I had invented.
Tags: Aptamers, Cell Biology, Current Literature, Evolution, fluorescence, In vitro selection, RNA
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TimeDelay-ARACNE: Reverse engineering of gene networks from time-course data by an information theoretic approach.
Thursday, September 15, 2011
The timecourse data sets are huge in systems biology. This paper details efforts to generate gene networks using microarray data. Time-course data used to create a gene network
Tags: bioinformatics, Biology, Network Science, software
Posted in Current Data Papers, Network Science | No Comments »
Protein networks in a plant model
Wednesday, September 14, 2011
Here’s a paper and press release for some recent work on the protein networks in Arabadopsis.
Tags: bioinformatics, Biology, Network Science, plants, proteins
Posted in Current Data Papers, Network Science | No Comments »
Rank-based edge reconstruction for scale-free genetic regulatory networks.
Tuesday, September 13, 2011
The construction of gene networks is tricky business and this group details a Rank-based edge method: Rank-based edge reconstruction
Tags: bioinformatics, Biology, Network Science, software
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Gene expression network reconstruction by convex feature selection when incorporating genetic perturbations.
Monday, September 12, 2011
Generating or constructing the network is one thing, but it’s very difficult to ensure the model is predictive in terms of perturbations. This paper details efforts on how to do just that: Perturbations on Genetic Networks
Tags: bioinformatics, Biology, Network Science, software
Posted in Current Data Papers, Lab Business | No Comments »